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HMMER discussion





AFriedman
This thread is for anyone who has any kind of question about the software HMMER, provided by the Eddy Lab at the Howard Hughes Medical Institute research campus in Janelia Farm. The link to HMMER is:

http://hmmer.janelia.org

Question #1:
I am using HMMER to search genomes for proteins with specific motifs. I have downloaded and installed HMMER onto my Mac OS 10.4.11 and am trying to run the software from my Terminal. In the folder hmmer-2.3.2, I'm trying to type the command
>hmmbuild globin.hmm globins50.msf
as specified in the tutorial, and my computer does not seem to recognize the command. When I type the command in any of the subfolders within hmmer-2.3.2, the computer also does not seem to recognize the command.

I would appreciate any suggestions. Thanks.
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